PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016466229.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 450aa    MW: 49196.9 Da    PI: 10.5622
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016466229.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00033052123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ F++   L  H+++H
  XP_016466229.1 30 YSCSFCKREFRSAQALGGHMNVH 52
                    99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.44E-62756No hitNo description
PROSITE profilePS5015711.243057IPR007087Zinc finger, C2H2
SMARTSM003550.0063052IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-53053IPR007087Zinc finger, C2H2
PROSITE patternPS0002803252IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MDEYSSQYSM WMKSKTIHVG AGLIWPPRCY SCSFCKREFR SAQALGGHMN VHRRDRARLK  60
QSLSPQNEAL SQSHSKSLSK RHKQSPARNS KSASLTLSSA VISKFSHLAF SPEIKELAAG  120
QKIMSSSQPD WLNSKAAVRV LSSTKQDFNR YGDKKLKGAG KKFILLDDDA NSSSVGVSAS  180
KRQKSCMVSS LPMLHKPCSS HEKYSFTTSD YKVGNRTSSM EDIDLELRLA IGDPPAKQLV  240
TLVAAEGNSE GIEGNTSEFG GCNNRRISTW RWGDRKYGIA SAERQAQKRR GEELPGVACA  300
KEVSYLRCPQ KLSTTRKSGR RPQKRTWVRK CAHANPVTDD AAPGADVARG RGRGQRGALA  360
AARASTRAAV EEPPVAPETL AQFLSMFSIL AEAGLIPIAP ATSQTRRGTK TPAAHTPEQR  420
VHVGQVSCVM VTQPVIPAQP VVRTAVFEEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-122552229superman protein
2l1o_A2e-122552229Transcriptional regulator SUPERMAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016466229.10.0PREDICTED: uncharacterized protein LOC107788989
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1400422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-21C2H2 family protein